PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG506300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 423aa    MW: 44732.7 Da    PI: 5.1652
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG506300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.8e-13185236155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ +  Lr+l+P +   + ++ + a+i   A+e+I++L+
  Pavir.5KG506300.1.p 185 QRMTHIAVERNRRRQMNEYLRILRSLMPGS---YVQRGDQASIIGGAIEFIRELE 236
                          79****************************...9******************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.5E-13183239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.86E-14183240No hitNo description
SuperFamilySSF474591.11E-16184249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.847184235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10185236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-9190241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.566348422IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MDKEQGSHHS HLDSFAPLDG AAAGDQPGGG AAEMVDYMLG QAPPHAQPPP QSQVSFDKLS  60
FSDVLQFADF GPKLALNQPA ASAGVGDPGD DEDDDDDGYF FRFQSLPSLP GGHQGQHHAN  120
REGSKATAAD DEGVHDGGGG GVSESTTLVQ QADGGGRAEK GGDQGKSGRR KRPRTVKTSE  180
EVESQRMTHI AVERNRRRQM NEYLRILRSL MPGSYVQRGD QASIIGGAIE FIRELEQLIQ  240
CLESQKRRRL YGGSGDAPRP VVDAAGAGAP TSTQPQHHQP QVPPPAAFFP PSLPFPAASS  300
GGGDCGGAKI LDLEAGGADA AGGLREEVAE NKSCLADIEV RALGADAMIK ILSRRRPGQL  360
IKTIAALEDM QMSILHTNIT TIEQTVLYSF NVKILGVARY SAEDIAGAVH QILSFIDVNY  420
AL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185196RMTHIAVERNRR
2245249KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277501e-137KJ727750.1 Zea mays clone pUT5691 bHLH transcription factor (bHLH22) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961059.10.0PREDICTED: transcription factor FAMA
SwissprotQ56YJ81e-112FAMA_ARATH; Transcription factor FAMA
TrEMBLA0A0A9GYP10.0A0A0A9GYP1_ARUDO; FMA
STRINGSi021834m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95023340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.16e-54bHLH family protein